SearchSearch
Pathogen Detection

Real-Time PCR Pathogen Detection for Food Safety Testing

Release products faster with confidence. Hygiena's validated real-time PCR solutions provide rapid pathogen detection across simple and complex food sample matrices, helping food manufacturers meet regulatory requirements.

Why Choose Hygiena® PCR for Food Pathogen Testing?

Hygiena's real-time PCR portfolio, including the BAX® System and foodproof® assays, is trusted by food and beverage manufacturers worldwide, from regional processors to the industry's largest global brands. With AOAC, Health Canada and ISO-certified real-time PCR testing, the broadest validated matrix portfolio in the industry, and over 20 years as the first dedicated PCR system built for food safety, the BAX System gives QA teams the confidence they need for critical food safety decisions. 

What Is PCR Pathogen Detection in Food Safety?

PCR testing detects harmful pathogens in food and environmental samples faster and more accurately than traditional culture methods. Hygiena's real-time PCR solutions combine certified assays with a fully automated workflow, helping manufacturers verify sanitation, release products faster, and stay compliant. 

A girl working in a lab

Why Food & Beverage Manufacturers Trust the BAX® System?

Assurance in Every Result

Built-in controls and automated interpretation help reduce repeat testing, minimize operator variability, and give teams confidence to make faster product release decisions.

Results in as Little as 55 Minutes Post-Enrichment

Faster PCR results help reduce product hold times, increase throughput, and support faster release decisions across your operation. 

The Broadest Validated Matrix Portfolio in the Industry.

More certified matrices, fewer coverage gaps, and greater consistency across products, facilities, and testing programs. 

Global Certifications You Can Stand Behind

AOAC, AFNOR, MicroVal, NordVal, and Health Canada. Independent verification, worldwide. 

Detect More. Validate More. Worry Less.

The broadest pathogen testing portfolio, addressing both global food safety priorities and segment-specific challenges.

Expert Support When You Need It

Direct access to application scientists. Real answers, fast. 

Which Pathogen Detection Method Is Most Accurate for Food Safety Testing?

Faster Confirmation of Presumptive Positive Results

When a pathogen screening assay identifies a presumptive positive, laboratories need additional confirmation before making critical food safety decisions. This confirmation relies on traditional methods, which can add days to the testing process before a result is confirmed. Hygiena's molecular confirmation assays provide a faster alternative by targeting a different genetic region than the initial screening assay. This enables laboratories to rapidly confirm presumptive positives, begin investigations sooner, and reduce the operational impact of waiting for traditional confirmation.

Benefits

  • Confirm presumptive positives in hours instead of days
  • Begin investigations and corrective actions sooner
  • Reduce product hold times and operational delays
  • Complement existing regulatory confirmation workflows
  • Increase confidence through an independent molecular target
  • Reduce inventory holding costs through earlier product release

How Does the BAX® System Work?

The BAX® System Q7 is a 96-well real-time PCR workstation built specifically for food safety laboratories. Combined with purpose-built software, it automates assay execution, interprets every reaction, and delivers clear, objective results without manual curve review.  Lyophilized reagent tablets eliminate liquid handling complexity, built-in internal controls verify every reaction, and automated result interpretation eliminates manual curve review. 

  • Broad assay compatibility — one instrument runs both BAX® System and foodproof® assay portfolios on one instrument 
  • High-throughput capacity — designed to support high-volume PCR testing workflows with reliable, consistent performance. 
  • Purpose-built software — automated call logic interprets every reaction and returns clear positive or negative results, eliminating operator judgment and improving consistency across technicians and sites. 
  • Automated sample preparation — Optional Prep Xpress liquid handling reduces technician labor, minimizes variability between operators, and helps standardize workflows across testing sites. 
  • SureTrend® Food Safety Management Software connectivity — real-time data sync across all facilities from day one 

One of the world's most widely installed and most validated real-time PCR food safety platforms.

What Our Customers Say About Hygiena's Real-Time PCR Solutions

Trusted by food manufacturers, contract laboratories and QA teams worldwide.

Globally Validated PCR Solutions Recognized for Innovation

The BAX® System and foodproof® assays are backed by some of the world's most rigorous food safety validation programs, including AOAC, AFNOR, MicroVal, NordVal and Health Canada. These independent, third-party certifications verify assay performance across complex food matrices and real-world laboratory conditions, giving food manufacturers confidence in every result.

That commitment to scientific excellence has also earned global recognition in the industry. The BAX® System and foodproof® assays have received prestigious awards, including the IAFP Innovation Award, the Food Tech Innovative Technology Award (Mexico), and the 2026 Innovative Product Award (China), reflecting Hygiena's continued leadership in PCR-based food safety testing.

One Connected Food Safety Platform

The BAX System and foodproof® assays are a key part of Hygiena One Health Diagnostics® ecosystem, connecting ATP monitoring, allergen detection, commercial sterility testing and PCR pathogen testing across the entire food value chain. 

SureTrend
SureTrend Food Safety Management Software

Centralizes PCR, environmental monitoring, and quality data across sites. Powered by RITA™, SureTrend identifies trends, flags unusual results, and delivers actionable insights for faster decision-making. 

KLEANZ
KLEANZ® Sanitation Management

Standardizes, documents, and verifies sanitation activities, improving visibility, accountability, and compliance while ensuring cleaning procedures are consistently executed. 

Real-Time PCR Pathogen Detection for Food Safety Testing

Our internationally certified PCR testing solutions provide validated methods for the most relevant foodborne pathogens (bacteria, viruses, yeasts and mold), with tailored approaches for your specific food matrices and production environments.

Not found what you are looking for?

PCR Testing Instruments, Kits, and Reagents for Food Safety Labs

PCR pathogen detection requires a coordinated system of reliable instruments, validated test kits, and specialized reagents that work together seamlessly. Browse our essential products that support your complete pathogen detection workflow, from sample preparation to result interpretation.

FAQs

Find answers to common questions about implementing and using PCR technology for pathogen detection in your food safety testing program, addressing key technical, practical, and compliance-related aspects.

Related News

See all news
Go to next